Functional Analysis and Visualization for large scale Omics data

Drawing Tree
Functional Tree : Menu
Visual normalization
Visual normalization method
Select how to normalize the node's value on each functional layer
Include KOs in undefined Biological category
Linear scale
Linear scale with limited domain
Sqrt scale
Sqrt scale with limited domain
Set a domain range
Internal node calculation
Internal node calculation method
Select a method to calculate the node's value based on peripheral KO
Average
Average * Node coverage
Summation
Summation * Node coverage
Node value prioritization
Select whether you would like to prioritize the input or calculated value as the node's value
Input
Calculation
Enrichment analysis: Metagenome
Background data: Metagenome
Select a background metagenomic data for enrichment analysis
Enrichment analysis: Genome
Genomic Enrichment analysis
Select organism type
Select alternative hypothesis
two.sided
greater
less
Can only choose one type of background Data
Multiple testing
Multiple testing method
Select a statistical correction method for the result of enrichment analysis
None
Bonferroni correction
False discovery rate
Recenter functional tree
Recenter node
Select a node to recenter the functional tree
Set coverage
Set a coverage value for module and pathway
Show Label of top nodes
Labeling for Top nodes
Select Labeling Color.
Theme 1
Theme 2 (Aply node color)
Display Arc Label
Select layer to add labeling.
Set range of value you would like add a label to.
Functional Category
Functional Process
Pathway
Module
KO
Show KO over threshhold
Auto open KO over threshhold
Set range of value for KO nodes.
Any KO nodes within this range will auto open as you update mapping customization.
Node Information
Name | |
ID | |
Definition | |
Input | |
Calculated | |
Mapped | |
Opacity | |
Color |
Node Description
Path from root
Biological category
Biological prcess
KEGG Pathway
KEGG Module
KEGG Orthology
Tree map
Expression Table
Drawing Tree